PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00144969001
Common NameGSBRNA2T00144969001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 569aa    MW: 64569 Da    PI: 4.8268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00144969001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12314357755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  GSBRNA2T00144969001 314 LAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 357
                          68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-1510149IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.18E-14306359No hitNo description
PROSITE profilePS5088816.488307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-17310371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-15313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10314357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-16314370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MESTMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWIG CCCGGTQLIE ENGTEEFSIE  60
GCRDVMFHHP RTKSCEFLDH LPSSIPLDSG GIYAETLLTN QTGWLSESSE PGFMQETICT  120
RVLIPIPGGL VELFATRHVA EDQNVVDFVM GNCNMLMDET VTINMMVADE VESKPYGMLC  180
GDIHQKGSKD EEMMNLPLPY DISTDQMRVN FLPQMSEYEA QQHLKVKSDY HHQDLGYLPE  240
NGSKEMMGMN PFSTEDGMSV MGEPSLLVNE QQIANDKEMN ENGTGSDCSD QIDDEDDQKY  300
KKKTGKHSQA KNLLAERRRR KKLNDRLYAL RSLVPRITKL DRASILGDAI NYVKELQIEA  360
KELQDELEEN SETEDGANRQ RGGVSLNGTV VTGFHPGISC NSNVPNLKQD VDIENANDKG  420
QEMEPQVDVA QLDGIEFFVK VICEYKPGGF TRLMEALDSL GLEVTNANTT RFLSLVSNVF  480
KVEKTDSEMV PAEHVRNSLL EITRNTSRGW HDDQMATGSI QNEKNEVDYQ HYDDHHHHSG  540
HHHLNDHQMN HSAQHHHHHQ HINHYQNQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300321KKKTGKHSQAKNLLAERRRRKK
2315322ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.22630.0flower
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00144969001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013598295.10.0PREDICTED: transcription factor ABORTED MICROSPORES
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLA0A078C2Q40.0A0A078C2Q4_BRANA; BnaC07g05950D protein
STRINGBra002004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]